Journal Club (Spring 2003)
Wednesdays, 12 noon-1pm
748 Mayo Building
Credit available as BInf 5480.
To change dates, swap with another presenter and tell Lynda Ellis.
| Jan 22 |
Lynda Ellis |
Organizational Meeting |
| Jan 29 | Jennifer Seffernick; Lynda Ellis |
2003 Pacific Symposium on Biocomputing http://psb.stanford.edu/ |
| Feb 5 | Lynda Ellis |
Lynda B. M. Ellis, Bo Kyeng Hou, Wenjun Kang, and Lawrence P. Wackett
(2003) "The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining" Nucl. Acids Res. 31: 262-265. http://nar.oupjournals.org/cgi/content/full/31/1/262 |
| Feb 12 |
Bob Milius; Tim Kunau; Chris Dwan |
2003 O'Reilly Bioinformatics Technology Conference http://conferences.oreillynet.com/bio2003/ |
| Feb 19 |
Emily Baechler |
Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, Relman DA,
Brown PO "Individuality and variation in gene expression patterns in human blood" Proc Natl Acad Sci U S A 2003 Feb 10; [epub ahead of print] http://www.pnas.org/cgi/reprint/252784499v1 |
| Feb 26 |
Steve Cannon |
M. Girvan and M. E. J. Newman (2002) "Community structure in social and biological networks" PNAS 99: 7821-7826. http://www.pnas.org/cgi/content/full/99/12/7821 |
| Mar 5 | Jordan Wood |
Jingtong Hou, Gregory E. Sims, Chao Zhang, and Sung-Hou Kim "A global representation of the protein fold space" Proc Natl Acad Sci U S A. 2003 Feb 26 [epub ahead of print] http://www.pnas.org/cgi/reprint/2628030100v1 |
| Mar 12 | Yongqing Zhang |
M. Clamp, D. Andrews, D. Barker, et al. (2003) "Ensembl 2002: accommodating comparative genomics" Nucleic Acids Research 31(1): 38-42. http://nar.oupjournals.org/cgi/content/full/31/1/38 |
| Mar 19 | No Journal Club | ***Spring Break*** |
| Mar 26 | Sean Anderson |
An-Suei Yang and Lu-yong Wang (2002) "Local structure-based sequence profile database for local and global protein structure predictions" Bioinformatics 18: 1650-1657. http://bioinformatics.oupjournals.org/cgi/reprint/18/12/1650.pdf |
| Apr 2 | Charlie Paule |
Dario Boffelli, Jon McAuliffe, Dmitriy Ovcharenko, Keith D. Lewis,
Ivan Ovcharenko, Lior Pachter, Edward M. Rubin (2003) "Phylogenetic Shadowing of Primate Sequences to Find Functional Regions of the Human Genome" Science 299: 1391-1394. http://www.sciencemag.org/cgi/content/full/299/5611/1391 |
| Apr 9 | Jennifer Seffernick |
Chiang RA, Meng EC, Huang CC, Ferrin TE, Babbitt PC (2003) "The Structure Superposition Database" Nucleic Acids Res. 31(1): 505-10. http://nar.oupjournals.org/cgi/content/full/31/1/505 |
| Apr 16 | Chris Dwan |
S. Hannenhalli, C. Chappey, E. Koonin, P. Pevzner. (1995) "Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case" Genomics 30: 299-311. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WG1-45S90YB-R&_coverDate=11%2F30%2F1995 &_alid=86230788&_rdoc=1&_fmt=&_orig=search&_qd=1&_cdi=6809&_sort=d &view=c&_acct=C000032378&_version=1&_urlVersion=0&_userid=616288&md5=5d0a6628fd4cf3614f8e2f8bcee7ecf9 |
| Apr 23 | Kevin Roberg-Perez |
Michael C. Giddings, Atul A. Shah, Ray Gesteland, and Barry Moore
(2003) "Genome-based fingerprint scanning" Proc. Natl. Acad. Sci. USA, 100 (1): 20-25. http://www.pnas.org/cgi/content/full/100/1/20 |
| Apr 30 | Tim Kunau |
"Computing Infrastructure for Life Sciences: Confessions of an Open
Source Zealot" BioCon2003, San Diego, CA, February 4, 2003 http://conferences.oreillynet.com/cs/bio2003/view/e_sess/3476 |
| May 7 | Jennifer Hall |
Aronow BJ, Toyokawa T, Canning A, Haghighi K, Delling U, Kranias E,
Molkentin JD, Dorn GW 2nd. (2001) "Divergent transcriptional responses to independent genetic causes of cardiac hypertrophy" Physiol Genomics 6(1):19-28 http://physiolgenomics.physiology.org/cgi/content/full/6/1/19 |