Journal Club (Spring 2002)
Wednesdays, 12 noon-1pm
664 Children's Rehab
(skyway to 6th floor ChRC from 3rd floor Mayo)
except as noted below.
To change dates, swap with another presenter and tell Lynda Ellis.
Evaluations
| Jan 23 | Organizational Meeting | |
| Jan 30 |
Bob Milius |
Ellis, Lynda B.M. and Milius, Robert P. (1994) "Valid and Invalid Implementations of GOR Secondary Structure Predictions" CABIOS, 10: 341-348. ftp://lenti.med.umn.edu/pub/milius/cabios.pdf |
| Feb 6 |
Chris Dwan |
First O'Reilly Bioinformatics Conference http://conferences.oreilly.com/biocon/ |
| Feb 13 |
Lynda Ellis |
Ninth DOE Genome Workshop http://www.ornl.gov/hgmis/publicat/02santa/ |
| Feb 20 |
Mark Furtney 342 Gortner, St Paul |
Garian, Robert (2001) "Prediction of quaternary structure from primary structure" Bioinformatics 17(6): 551-556 http://bioinformatics.oupjournals.org/cgi/reprint/17/6/551 |
| Feb 27 |
Steve Cannon 342 Gortner, St Paul |
Vision, Todd J.; Brown, Daniel G.; Tanksley, Steven D. (2000) "The Origins of Genomic Duplications in Arabidopsis" Science (December 15, 2000) 290: 2114-2117 http://www.sciencemag.org/cgi/content/full/290/5499/2114 |
| Mar 6 | Charlie Paule |
Golub, T.R. et al. (1999) "Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring" Science 286: 531-537 http://www.sciencemag.org/cgi/reprint/286/5439/531 |
| Mar 13 | Emily Baechler |
Pomeroy, S.L. et al. (2002) "Prediction of central nervous system embryonal tumour outcome based on gene expression" Nature 415: 436-442. http://www.nature.com/cgi-taf/DynaPage.taf? file=/nature/journal/v415/n6870/full/415436a_fs.html&content_filetype=pdf |
| Mar 20 | *Spring Break* | NO JOURNAL CLUB |
| Mar 27 |
Jeff Lande and Vincent Gimino |
Van Gelder RN, von Zastrow ME, Yool A, Dement WC, Barchas JD,
Eberwine JH. (1990) "Amplified RNA synthesized from limited quantities of heterogeneous cDNA." PNAS 87: 1663-1667. http://www.pnas.org/cgi/reprint/87/5/1663 Baugh, L. R. ; Hill, A. A.; Brown, E. L.; Hunter, C.P. (2001) "Quantitative analysis of mRNA amplification by in vitro transcription" Nucleic Acids Research 29: E29. http://nar.oupjournals.org/cgi/content/full/29/5/e29 |
| Apr 3 | Eric Klee |
Bannai, H.; Tamada, Y.; Maryuama, K.; Miyano, S. (2002) "Extensive feature detection of N-terminal protein sorting signals" Bioinformatics 18: 298-305 http://bioinformatics.oupjournals.org/cgi/reprint/18/2/298 |
| Apr 10 | Jennifer Hall |
Kadota K, Miki R, Bono H, Shimizu K, Okazaki Y, Hayashizaki Y.
(2001) Preprocessing implementation for microarray (PRIM): an efficient method for processing cDNA microarray data. Physiol Genomics. 4(3): 183-8. http://physiolgenomics.physiology.org/cgi/reprint/4/3/183 |
| Apr 17 |
Jordan Wood 342 Gortner, St Paul |
Karchin, R.; Karplus, K.; Haussler, D. (2002) "Classifying G-protein coupled receptors with support vector machines" Bioinformatics 18: 147-159. http://bioinformatics.oupjournals.org/cgi/reprint/18/1/147 |
| Apr 24 | Tim Kunau |
Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L. (2001) "The Distributed Annotation System." BMC Bioinformatics. 2(1):7. http://www.biomedcentral.com/1471-2105/2/7 |
| May 1 | Dianna Crawford |
Yaffe MB, Leparc GG, Lai J, Obata T, Volinia S, Cantley LC.
(2001) A motif-based profile scanning approach for genome-wide prediction of signaling pathways. Nat Biotechnol 19(4): 348-53. http://www.nature.com/cgi-taf/DynaPage.taf? file=/nbt/journal/v19/n4/full/nbt0401_348.html&filetype=pdf |
| May 8 |
Tina Schmidt 342 Gortner, St Paul |
Grupe A, et al. (2001) In silico mapping of complex disease-related traits in mice. Science 292(5523): 1915-8. http://www.sciencemag.org/cgi/reprint/292/5523/1915 |