Journal Club (Fall 2007)
Thursdays, 12 noon-1pm
239 Gortner Lab
(except if indicted elsewhere)
Credit available as BInf 5480.
To change dates, swap with another presenter and tell Lynda Ellis.
| Date | Presenter(s) | Title/Articles |
|---|---|---|
| Sept 6 | Arkady Khodursky | Organizational Meeting Finding Bioinformatics Articles |
| Sept 13 | Lynda Ellis, Gaurav Pandey, Huzefa Rangwala, Hugues Sicotte | Report on ISMB07 http://www.iscb.org/ismbeccb2007 |
| Sept 20 | Sean Corum |
Ronen M, Rosenberg R, Shraiman BH, Alon B (2002) "Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics" Proc. Nat. Acad. Sci. 99: 10555-10560. http://www.pnas.org/cgi/content/full/99/16/10555 |
| Sept 27 | Zheng Jin Tu |
Rachman H, Strong M, Schaible U, Schuchhardt J, Hagens K, Mollenkopf H, Eisenberg D, Kaufmann SH. (2006) "Mycobacterium tuberculosis gene expression profiling within the context of protein networks." Microbes Infect. 2006 Mar;8(3):747-57. http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:16513384 |
| Oct 4 | Arkady Khodursky |
2007 Gordon Conference on Chromosome Dynamics http://www.grc.org/programs.aspx?year=2007&program=chromdyn |
| Oct 11 | Zhigang Zhang | Zhang CT, Zhang R, Ou HY. (2003) The Z curve database: a graphic representation of genome sequences. Bioinformatics, 19, 593-599. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/5/593 |
| Oct 18 | Maria Metty | Tooby J, Cosmides L, Barrett, HC (2004) "Resolving the Debate on Innate Ideas" In P. Carruthers, S. Laurence and S. Stich (eds.), The Innate Mind: Structure and Content, Oxford University Press, 2004. |
| Oct 25 | Jun Li | Nagasaki H, Arita M, Nishizawa T, Suwa M, Gotoh O. (2005) "Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes" Gene. 364:53-62. http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:16219431 |
| Nov 1 | Poonam Srivastava | Miyashiro T, Goulian M. (2007) "Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system." Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16305-10. http://www.pnas.org/cgi/content/full/104/41/16305 |
| Nov 8 | Charlie Paule | Chiarugi D, Degano P, Marangoni R. (2007) "A computational approach to the functional screening of genomes." PLoS Comput Biol. 2007 Sep 28;3(9):1801-6. http://compbiol.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pcbi.0030174 |
| Nov 15 | Hossein Zare |
Kolesov G, Wunderlich Z, Laikova ON, Gelfand MS, Mirny LA. (2007) "How gene order is influenced by the biophysics of transcription regulation." Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13948-53. http://www.pnas.org/cgi/content/full/104/35/13948 |
| Nov 22 | No Journal Club | ***Thanksgiving*** |
| Nov 29 | John Bumpus | Doddapaneni H, Chakraborty R, and Yadav JS (2005) "Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: Evidence for gene duplications and extensive gene clustering" BMC Genomics 2005, 6:92. http://www.biomedcentral.com/1471-2164/6/92 Yadav J, Soellner MB, Loper JC, Mishra PK (2003) "Tandem cytochrome P450 monooxygenase genes and splice variants in the white rot fungus Phanerochaete chrysosporium: cloning, sequence analysis, and regulation of differential expression" Fungal Genetics and Biology 38: 10-21. Science Direct http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:12553932 |
| Dec 6 | Jim Beattie and Peter Kirlew | Bioinformatics Search in UM Libraries |