Journal Club (Fall 2006)
Wednesdays, 12 noon-1pm
748 Mayo Building
(except if indicted elsewhere)
Credit available as BInf 5480.
To change dates, swap with another presenter and tell Lynda Ellis.
| Date | Presenter(s) | Title/Articles |
|---|---|---|
| Sep 6 |
Wei Pan, Kevin Messner |
Organizational Meeting Finding Bioinformatics Articles |
| Sep 13 | Chunhui Li |
Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, Anderson I, Mavrommatis K, Kunin V, Garcia Martin H, Dubchak I, Hugenholtz P, Kyrpides NC. (2006) “An experimental metagenome data management and analysis system.” Bioinformatics. 2006 Jul 15;22(14):e359-67. http://bioinformatics.oxfordjournals.org/cgi/reprint/22/14/e359
Rodriguez-Brito B, Rohwer F, Edwards RA. (2006) |
| Sep 20 | Gregg Lind |
Paul R Burton, Martin D Tobin, John L Hopper (2005) “Key concepts in genetic epidemiology” Lancet 2005; 366: 941-951. http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:16154023 |
| Sep 27 | Tim Kunau |
Ben Lund, Tony Hammond, Martin Flack, Timo Hannay (2005) “Social Bookmarking Tools (II): A Case Study - Connotea” D-Lib Magazine 11:(4) http://www.dlib.org/dlib/april05/lund/04lund.html http://www.connotea.org/ |
| Oct 4 | Martin Maiers |
Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, Nemazee D, Ponomarenko JV, Sathiamurthy M, Schoenberger S, Stewart S, Surko P, Way S, Wilson S, Sette A. (2005) “The immune epitope database and analysis resource: from vision to blueprint” PLoS Biol. 2005 Mar;3(3):e91. http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pbio.0030091 Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, Nemazee D, Ponomarenko JV, Sathiamurthy M, Schoenberger SP, Stewart S, Surko P, Way S, Wilson S, Sette A. (2005) “The design and implementation of the immune epitope database and analysis resource.” Immunogenetics. 2005 Jun;57(5):326-36. Epub 2005 May 14. http://www.springerlink.com/content/r071281405160l01/ http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:15895191 http://www.immuneepitope.org/ |
| Oct 11 | Getiria Onsongo |
Fang Fang, Shicai Fan, Xuegong Zhang, and Michael Q. Zhang (2006) “Predicting methylation status of CpG islands in the human brain” Bioinformatics 2006 22(18):2204-2209 http://bioinformatics.oxfordjournals.org/cgi/content/full/22/18/2204 http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:16837523 http://166.111.201.7/MethCGI.html |
| Oct 18 | Junfeng Gao |
Hristovski D, Peterlin B, Mitchell JA, Humphrey SM.(2005) “Using literature-based discovery to identify disease candidate genes” Int J Med Inform. 2005 Mar;74(2-4):289-98. http://linkinghub.elsevier.com/retrieve/pii/S1386505604001650 http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:15694635 http://www.mf.uni-lj.si/bitola/ |
| Oct 25 | Ben Jordan |
Kelley BP, Yuan B, Lewitter F, Sharan R, Stockwell BR, Ideker T. (2004) “PathBLAST: a tool for alignment of protein interaction networks.” Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W83-8. http://nar.oxfordjournals.org/cgi/content/full/32/suppl_2/W83 http://www.pathblast.org/ |
| Nov 1 | Renuka Adibhatla |
Pierleoni A, Martelli PL, Fariselli P, Casadio R (2006)
“BaCelLo: a balanced subcellular localization predictor” Bioinformatics 22(14): e408-e416. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/14/e408 http://gpcr.biocomp.unibo.it/bacello/ |
| Nov 8 | Shawn Lesh |
A.T. Manninga, J.T. Garvina, R.I. Shahbazia, N. Millera, R.E. McNeilla and M.J. Kerin (2006) “Molecular profiling techniques and bioinformatics in cancer research” European Journal of Surgical Oncology Accepted 6 September 2006. Available online 27 October 2006. http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:17071042 |
| Nov 15 | Zheng Jin Tu |
Margulies et al. (2005) “Genome sequencing in microfabricated high-density picolitre reactors” Nature 437, 376-380 (15 September 2005) http://www.nature.com/nature/journal/v437/n7057/full/nature03959.html http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16056220 |
| Nov 22 | No Journal Club | ***Thanksgiving*** |
| Nov 29 | Wayne Xu |
Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P. (2006) “Co-evolution of transcriptional and post-translational cell-cycle regulation.” Nature. 2006 Oct 5;443(7111):594-7. http://www.nature.com/nature/journal/v443/n7111/full/nature05186.html http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:17006448 |
| Dec 6 | Carlos Sosa |
Michelle S. Scott, David Y. Thomas, Michael T. Hallett (2004) “Predicting Subcellular Localization via Protein Motif Co-Occurrence” Genome Research 14:1957-1966, 2004. http://www.genome.org/cgi/content/full/14/10a/1957 |
| Dec 13 | Jim Beattie | Eric Lander, Director, Whitehead Institute/MIT Center for Genome Research “Reading Genes and Genomes,” part of HHMI’s Scanning Life’s Matrix DVD |