Journal Club (Fall 2003)
Wednesdays, 12 noon-1pm
748 Mayo Building
Credit available as BInf 5480.
To change dates, swap with another presenter and tell Lynda Ellis.
| Sept 3 |
Lynda Ellis |
Organizational Meeting |
| Sept 10 | Chris Dwan |
Vincent Daubin, Nancy A. Moran, Howard Ochman (2003) "Phylogenetics and the Cohesion of Bacterial Genomes" Science 301: 829-832. http://www.sciencemag.org/cgi/content/full/301/5634/829 |
| Sept 17 | Jennifer Hall |
Ho M, Yang E, Matcuk G, Deng D, Sampas N, Tsalenko A, Tabibiazar R,
Zhang Y, Chen M, Talbi S, Ho YD, Wang J, Tsao PS, Ben-Dor A, Yakhini Z, Bruhn L, Quertermous T. (2003) "Identification of endothelial cell genes by combined database mining and microarray analysis." Physiological Genomics 13:249-262. http://physiolgenomics.physiology.org/cgi/content/full/13/3/249 |
| Sept 24 | Paul Horner |
Jonathan A. Barker and Janet M. Thornton (2003) "An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis" Bioinformatics 19: 1644-1649. http://bioinformatics.oupjournals.org/cgi/content/abstract/19/13/1644 |
| Oct 1 | Tim Kunau |
Laura Bonetta (2003) "Lab architecture: Do you want to work here?" Nature 424: 718 - 720. http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v424/n6950/full/424718a_fs.html and Maya Pines (2003) "Bringing the Sciences Together" Howard Hughes Medical Institute Bulletin, June 2003, 24-28. http://www.hhmi.org/bulletin/june2003/inter/inter2.html |
| Oct 8 |
Sean Anderson |
D.C. McShan, S. Rao and I. Shah (2003) "PathMiner: predicting metabolic pathways by heuristic search" Bioinformatics 19: 1692-1698. http://bioinformatics.oupjournals.org/cgi/content/abstract/19/13/1692 |
| Oct 15 | Emily Gillespie |
Date, S.V. and Marcotte, E.M. (2003) "Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages." Nature Biotechnology 21: 1055-1062. http://www.nature.com/cgi-taf/DynaPage.taf?file=/nbt/journal/v21/n9/full/nbt861.html |
| Oct 22 | Michaela Tsai |
JC Chang, EC Wooten, A Tsimelzon, SG Hilsenbeck, MC Gutierrez, R
Elledge, S Mohsin, CK Osborne, GC Chamness, DC Allred and P
O'Connell "Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer" The Lancet 362: 362-369 (2 August 2003). http://www.sciencedirect.com/ |
| Oct 29 | Charlie Paule |
ZS Qin, LA McCue, W Thompson, L Mayerhofer, CE Lawrence, JS Liu
(2003) "Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites." Nature Biotech. 21(4) 435-439. http://www.nature.com/cgi-taf/DynaPage.taf?file=/nbt/journal/v21/n4/full/nbt802.html |
| Nov 5 | Steve Cannon |
Luscombe NM, Qian J, Zhang Z, Johnson T, Gerstein M (2002) "The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties." Genome Biology, 3(8):research0040.1 - 0040.7 http://genomebiology.com/2002/3/8/research/0040 |
| Nov 12 | Stacey Olson |
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin
EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. (2003) "The COG database: an updated version includes eukaryotes." BMC Bioinformatics, 4:41 http://www.biomedcentral.com/1471-2105/4/41 |
| Nov 19 | Haudy Kazemi |
Victor Maojo and Casimir A. Kulikowski. (2003) "Bioinformatics and Medical Informatics: Collaboration on the Road to Genomic Medicine?" Journal of the American Medical Informatics Association 10(6):515-522. http://www.jamia.org/cgi/content/full/10/6/515 |
| Nov 26 | No Journal Club |
***THANKSGIVING*** |
| Dec 3 | Ketan Patel |
M Nagata, H Fujita, H Ida, H Hoshina, T Inoue, Y Seki, M Ohnishi, T
Ohyama, S Shingaki, M Kaji, T Saku, R Takagi (2003) "Identification of potential biomarkers of lymph node metastasis in oral squamous cell carcinoma by cDNA microarray analysis" Int. J. Cancer 106: 683-689 http://www3.interscience.wiley.com/cgi-bin/fulltext/104537903/HTMLSTART |
| Dec 10 | NHGRI |
"Deciphering Nature's Alphabet: From the Double Helix to the Human
Genome Project" 65 minute video documentary produced by the National Human Genome Research Institute to honor the 50th Anniversary of Watson and Crick's paper on the structure of DNA. http://umnlib.oit.umn.edu/F/?func=find-c&ccl_term=sys%3D004337260 |