Journal Club (Fall 2002)
Wednesdays, 12 noon-1pm
748 Mayo Building
Credit available as BInf 5480.
To change dates, swap with another presenter and tell Lynda Ellis.
| Sept 4 |
Lynda Ellis |
Organizational Meeting |
| Sept 11 | Eric Klee, Rich Maclin, Lynda Ellis |
ISMB02: CSci topics, WEB02, NSF BOF lunch http://ismb02.org/ |
| Sept 18 | Jeff Lande, Guo-Yun Yu, Steve Cannon |
ISMB02: microarray topics, BOSC http://ismb02.org/ |
| Sept 25 |
Chris Dwan |
Michael B. Elowitz, Arnold J. Levine, Eric D. Siggia, Peter S. Swain
(2002) "Stochastic Gene Expression in a Single Cell" Science 297(5584): 1183-1186. http://www.sciencemag.org/cgi/reprint/297/5584/1183 |
| Oct 2 |
Jeff Lande |
Trey Ideker, Owen Ozier, Benno Schwikowski, and Andrew F. Siegel
(2002) "Discovering regulatory and signalling circuits in molecular interaction networks" Bioinformatics 18: S233-S240. http://bioinformatics.oupjournals.org/cgi/reprint/18/suppl_1/S233 |
| Oct 9 |
Eric Klee |
Richard Mott, Jorg Schultz, Peer Bork, and Chris P. Ponting "Predicting protein cellular localization using a domain projection method" Genome Research, 2002 Aug; 12(8):1168-74. http://www.genome.org/cgi/content/full/12/8/1168 |
| Oct 16 | Charlie Paule |
Peter D Karp, Suzanne Paley and Pedro Romero (2002) "The Pathway Tools software", Bioinformatics, 18: Suppl. 1, S225-S232. http://bioinformatics.oupjournals.org/cgi/reprint/18/suppl_1/S225 |
| Oct 23 | Haudy Kazemi |
M. Chow and D. Fernandez (2001) "Intellectual Property Strategy in Bioinformatics" Suffolk University Law School Journal of High Technology Law http://www.iploft.com/articles2.htm#article2 First Virtual Conference on Genomics and Bioinformatics http://midas-10.cs.ndsu.nodak.edu/bio/papers/intellectual_property_strategy_in_bioinformatics.pdf |
| Oct 29 | Steve Cannon |
E. Demir, O. Babur, U. Dogrusoz, A. Gursoy, G. Nisanci, R.
Cetin-Atalay, and M. Ozturk. (2002) "PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways." Bioinformatics 18: 996-1003. http://bioinformatics.oupjournals.org/cgi/reprint/18/7/996 |
| Nov 6 | Emily Baechler |
WG Richards. (2002) Virtual screening using grid computing: the screensaver project. Nat Rev Drug Discov 1(7):551-5. http://www.nature.com/cgi-taf/DynaPage.taf?file=/nrd/journal/v1/n7/full/nrd841_fs.html&filetype=PDF |
| Nov 13 | Liying Zhang |
Tong Lhn Odom, Nicola J. Rinaldi, Francois Robert, et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298: 799-804. http://www.sciencemag.org/cgi/content/full/298/5594/799 Supplementary material at: http://web.wi.mit.edu/young/regulator_network/ |
| Nov 20 | Jordan Wood |
E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A.-L.
Barabasi "Hierarchical Organization of Modularity in Metabolic Networks" Science 297(5586), Aug, 30, 2002, 1551-1555. http://www.sciencemag.org/cgi/content/full/297/5586/1551 |
| Nov 27 |
Social Hour |
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| Dec 4 | Tangayi Githu |
M. B. Yaffe, G. G. Leparc, J. Lai, T. Obata, S. Volinia & L. C.
Cantley "A motif-based profile scanning approach for the genome_wide prediction of signaling pathways" Nature Biotechnology 19(4): 348-353. http://www.nature.com/cgi-taf/DynaPage.taf?file=/nbt/journal/v19/n4/full/nbt040_348.html&filetype=PDF |
| Dec 11 | Jennifer Hall |
EF Petricoin III, JL Hackett, LJ Lesko, RK Puri, SI Gutman, K
Chumakov, J Woodcock, DW Feigal Jr., KC Zoon & FD Sistare Medical applications of microarray technologies: a regulatory science perspective Nature Genetics (2002) 32(4S): 474 - 479. http://www.nature.com/cgi-taf/DynaPage.taf?file=/ng/journal/v32/n4s/full/ng1029.html&filetype=pdf |