Journal Club (Fall 2009)

Wednesdays, 12 noon-1pm
330 Diehl Hall
Unless stated otherwise (*)

1cr S/N available as HInf 5494.
To change dates, swap with another presenter and tell Lynda Ellis.

UM Library's BIJC Information Resources and Services

Date Presenter(s) Title/Articles
Sept 9 Lynda Ellis
Peter Kirlew
Organizational Meeting
Finding Bioinformatics Articles
Sept 16 Lynda Ellis
Bill Long (Cray) 
Report on ISMB09, July 27 - July 2.
Sept 23 Zheng Jin Tu  Pushkarev D, Neff NF, Quake SR (2009)
"Single-molecule sequencing of an individual human genome"
Nature Biotechnology, 27(9): 847-850, September 2009.
http://www.nature.com/nbt/journal/v27/n9/abs/nbt.1561.html
http://www.bio-itworld.com/issues/2009/sep-oct/NGS-quake.html
Sept 30 Getiria Onsongo  Tiffin N, Andrade-Navarro MA, Perez-Iratxeta C. (2009)
"Linking genes to disease: it's all in the data"
Genome Med. 2009 Aug 7;1(8):77.
http://www.genomemedicine.com/content/1/8/77/  
Oct 7 Yixin Chen  Baumbach J, Wittkop T, Kleindt CK, Tauch A. (2009)
"Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet"
Nature Protocols 4, 992 - 1005 (2009)
http://www.nature.com/nprot/journal/v4/n6/abs/nprot.2009.81.html
http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:19498379
http://coryneregnet.cebitec.uni-bielefeld.de/v5/

Baumback J, Tauch A, Rahmann S. (2009)
"Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks."
Briefings in Bioinformatics 10: 75-83.
http://bib.oxfordjournals.org/cgi/content/full/10/1/75  
Oct 14
Victor Bloomfield  C. Bock, K. Halachev, J. Büch and T. Lengauer (2009)
"EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data"
Genome Biology 2009, 10:R14
http://genomebiology.com/2009/10/2/R14
http://epigraph.mpi-inf.mpg.de/ 
Oct 21
Dimitrije Jevremovic  Gevorgyan A, Poolman MG, Fell DA (2008)
"Detection of stoichiometric inconsistencies in biomolecular models"
Bioinformatics 2008 24(19):2245-2251.
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn425
http://mudshark.brookes.ac.uk/index.php/Albert_Gevorgyan 
Oct 28
11:30-1pm
*Mississippi Rm
Coffman Union
Kenneth Goodman
U Miami 
"Computers, Patients, and the Health of Populations:
Next Steps in Ethics and Informatics"
http://www.lifesci.consortium.umn.edu/conferences/ken_goodman_2009
Free, but register at the above link if you will attend. 
Nov 4 Tongbin Li  Liu J, Kang S, Tang C, Ellis LB and Li T. (2007)
Meta-prediction of protein subcellular localization with reduced voting.
Nucleic Acids Res, 35, e96.
http://nar.oxfordjournals.org/cgi/content/full/35/15/e96

Wan J, Kang S, Tang C, Yan J, Ren Y, Liu J, Gao X, Banerjee A, Ellis LB and Li T. (2008)
Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection.
Nucleic Acids Res, 36, e22.
http://nar.oxfordjournals.org/cgi/content/abstract/36/4/e22 
Nov 11 Daniel Beisang  Ahmed F, Ansari HR, Raghava GP. (2009).
Prediction of guide strand of microRNAs from its sequence and secondary structure.
BMC Bioinformatics. 10:105.
http://www.biomedcentral.com/1471-2105/10/105/
http://crdd.osdd.net:8081/RISCbinder/  
Nov 18 Mike Hardy 
Koch, Richard (1998)
The 80/20 Principle: The Secret of Achieving More With Less
Doubleday, New York, 1998.
ISBN: 0385491743  
Nov 25 No Journal Club   Happy Thanksgiving!!  
Dec 2 Wayne Xu   
Dec 9 Tamara Schmidt-Hegge
Jeff Gao 
 
Dec 16 Peter Kirlew  Biological Videos 

Past Journal Clubs