Journal Club (Fall 2009)
Wednesdays, 12 noon-1pm
330 Diehl Hall
Unless stated otherwise (*)
1cr S/N available as HInf 5494.
To change dates, swap with another presenter and tell Lynda Ellis.
UM Library's BIJC Information Resources and Services
| Date | Presenter(s) | Title/Articles |
|---|---|---|
| Sept 9 | Lynda Ellis Peter Kirlew |
Organizational Meeting Finding Bioinformatics Articles |
| Sept 16 | Lynda Ellis Bill Long (Cray) |
Report on ISMB09, July 27 - July 2. |
| Sept 23 | Zheng Jin Tu |
Pushkarev D, Neff NF, Quake SR (2009) "Single-molecule sequencing of an individual human genome" Nature Biotechnology, 27(9): 847-850, September 2009. http://www.nature.com/nbt/journal/v27/n9/abs/nbt.1561.html http://www.bio-itworld.com/issues/2009/sep-oct/NGS-quake.html |
| Sept 30 | Getiria Onsongo |
Tiffin N, Andrade-Navarro MA, Perez-Iratxeta C. (2009) "Linking genes to disease: it's all in the data" Genome Med. 2009 Aug 7;1(8):77. http://www.genomemedicine.com/content/1/8/77/ |
| Oct 7 | Yixin Chen |
Baumbach J, Wittkop T, Kleindt CK, Tauch A. (2009) "Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet" Nature Protocols 4, 992 - 1005 (2009) http://www.nature.com/nprot/journal/v4/n6/abs/nprot.2009.81.html http://tc.liblink.umn.edu/sfx_local?sid=Entrez:PubMed&id=pmid:19498379 http://coryneregnet.cebitec.uni-bielefeld.de/v5/ Baumback J, Tauch A, Rahmann S. (2009) "Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks." Briefings in Bioinformatics 10: 75-83. http://bib.oxfordjournals.org/cgi/content/full/10/1/75 |
| Oct 14 |
Victor Bloomfield |
C. Bock, K. Halachev, J. Büch and T. Lengauer (2009) "EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data" Genome Biology 2009, 10:R14 http://genomebiology.com/2009/10/2/R14 http://epigraph.mpi-inf.mpg.de/ |
| Oct 21 |
Dimitrije Jevremovic |
Gevorgyan A, Poolman MG, Fell DA (2008) "Detection of stoichiometric inconsistencies in biomolecular models" Bioinformatics 2008 24(19):2245-2251. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn425 http://mudshark.brookes.ac.uk/index.php/Albert_Gevorgyan |
| Oct 28 11:30-1pm *Mississippi Rm Coffman Union |
Kenneth Goodman U Miami |
"Computers, Patients, and the Health of Populations: Next Steps in Ethics and Informatics" http://www.lifesci.consortium.umn.edu/conferences/ken_goodman_2009 Free, but register at the above link if you will attend. |
| Nov 4 | Tongbin Li |
Liu J, Kang S, Tang C, Ellis LB and Li T. (2007) Meta-prediction of protein subcellular localization with reduced voting. Nucleic Acids Res, 35, e96. http://nar.oxfordjournals.org/cgi/content/full/35/15/e96 Wan J, Kang S, Tang C, Yan J, Ren Y, Liu J, Gao X, Banerjee A, Ellis LB and Li T. (2008) Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection. Nucleic Acids Res, 36, e22. http://nar.oxfordjournals.org/cgi/content/abstract/36/4/e22 |
| Nov 11 | Daniel Beisang |
Ahmed F, Ansari HR, Raghava GP. (2009). Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics. 10:105. http://www.biomedcentral.com/1471-2105/10/105/ http://crdd.osdd.net:8081/RISCbinder/ |
| Nov 18 | Mike Hardy |
Koch, Richard (1998) The 80/20 Principle: The Secret of Achieving More With Less Doubleday, New York, 1998. ISBN: 0385491743 |
| Nov 25 | No Journal Club | Happy Thanksgiving!! |
| Dec 2 | Wayne Xu | |
| Dec 9 | Tamara Schmidt-Hegge Jeff Gao |
|
| Dec 16 | Peter Kirlew | Biological Videos |