What is Bioinformatics (2002-2003)

Defining Bioinformatics

• British Medical Journal
  Bayat, Ardeshir (2002) "Science, medicine, and the future: Bioinformatics" 324: 1018-1022.
  http://bmj.com/cgi/reprint/324/7344/1018
• Engineering in Medicine and Biology
  Carlis, J.V. (2002) "Pitfalls and paths to success in interdisciplinary scientific database research"
  Engineering in Medicine and Biology Magazine, IEEE 21(6): 117-122.
  http://ieeexplore.ieee.org/Xplore/DynWel.jsp
• Methods in Biochemical Analysis
  Altman RB, Dugan JM. Defining bioinformatics and structural bioinformatics.
  Methods Biochem Anal 2003;44:3-14.
  
• Journal of the American Medical Informatics Association
  Victor Maojo MD, PhD and Casimir A. Kulikowski PhD. (2003)
  Bioinformatics and Medical Informatics: Collaboration on the Road to Genomic Medicine?
  JAMIA 21: 1337-1342.
  http://www.jamia.org/cgi/content/full/10/6/515

Training, Funding, and Career Possibilities

• Bioinformatics Editorials
  Christos A. Ouzounis and Alfonso Valencia (2003) Early bioinformatics: the birth of a discipline - a personal view
  Bioinformatics 19: 2176-2190.
  http://bioinformatics.oupjournals.org/cgi/content/abstract/19/17/2176
  Chris Sander "The Journal Bioinformatics, key medium for computational biology."(Jan, 2002; 18: 1-2).
  http://bioinformatics.oupjournals.org/cgi/reprint/18/1/1
  Christos Ouzounis, "Bioinformatics and the Theoretical Foundations of Molecular Biology." (March, 2002: 18: 377-378.)
  http://bioinformatics.oupjournals.org/cgi/reprint/18/3/377
  Rainer Fuchs, "From sequence to biology: The impact on bioinformatics." (April, 2002: 18: 505-506.)
  http://bioinformatics.oupjournals.org/cgi/reprint/18/4/505
  Ken Nishikawa, "Information Concept in Biology." (May 2002: 18: 649-651.)
  http://bioinformatics.oupjournals.org/cgi/reprint/18/5/649
  Burkhard Rost, Barry Honig, and Alfonso Valencia, "Bioinformatics in structural genomics." (July 2002 18:897.)
  http://bioinformatics.oupjournals.org/cgi/reprint/18/7/897
  Alfonso Valencia, "Bioinformatics: Biology by Other Means" (December 2002 18: 1551-1552.)
  http://bioinformatics.oupjournals.org/cgi/reprint/18/12/1551
  D. Curtis Jamison, "Open Bioinformatics." (April 12, 2003 19: 679-680.)
  http://bioinformatics.oupjournals.org/cgi/reprint/19/6/679
• Science Next Wave
  Karin Van Haren "Bioinformatics Funding Boost Means More Science Training" (24 May 2002)
  http://nextwave.sciencemag.org/cgi/content/full/2002/05/23/1
  P. Kolatkar "Biocomputing at Singapore? Top R&D Institutes" (17 May 2002)
  http://nextwave.sciencemag.org/cgi/content/full/2002/05/15/5
  Dave Jenson "Job Market Hype: Media Misinformation Puts a Spin on Biotech Job Market" (18 October 2002)
  http://nextwave.sciencemag.org/cgi/content/full/2002/10/17/2
  Jennifer Gardy and Fiona Brinkman "The Benefits of Interdisciplinary Research: Our Experiences with Pathogen Bioinformatics" (17 January 2003)
  http://nextwave.sciencemag.org/cgi/content/full/2003/01/15/1
  Gurbaksh Basi, Robert Clum and Carolyn Modi "An Array of Opportunities" (1 April 2003)
  http://nextwave.sciencemag.org/cgi/content/full/2003/04/09/2
• Department of Commerce, Economics and Statistics Administration
  Cassandra Ingram and Gurmukh Gill (2003) in Digital Economy 2003
  "Chapter 6: Information Technology's Role in Life Sciences Research & Development" pp 81-89.
  http://www.esa.doc.gov/DigitalEconomy2003.cfm
• Chemical and Engineering News
  Ann Thayer, "Genomics Moves On" (Cover Story) (October 14, 2002)
  http://pubs.acs.org/cen/coverstory/8041/8041genomics.html Celia M. Henry, "Careers in Bioinformatics: Field is not significantly affected by economic downturn; qualified people are still hard to find"
  (Employment) (Jan. 7, 2002)
  http://pubs.acs.org/cen/employment/8001/8001employment.html
• Bio-IT World
  Beth Schachter "Informatics Moves to the Head of the Class" (June 12, 2002)
  http://www.bio-itworld.com/archive/061202/class.html
• The Scientist
  Bob Calandra, "Bioinformatics Knowledge Vital to Careers" (Sept. 2, 2002)
  http://www.the-scientist.com/yr2002/sep/prof1_020902.html
  Jane Salodof MacNeil, "Molecular Databases Grow, and Grow, ... and Grow" (July 28, 2003)
  http://www.the-scientist.com/yr2003/jul/lcprofile_030728.html
• Nature
  Lincoln Stein "Creating a bioinformatics nation" (May 9 2002 417: 119-120)
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v417/n6885/full/417119a_fs.html
  Marina Chicurel "Bioinformatics: Bringing It All Together" (419: 751-757 (2002))
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v419/n6908/full/419751a_fs.html
  Mark S. Boguski and Martin W. Mcintosh "Biomedical informatics for proteomics" (422: 233-237 (2003))
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v422/n6928/full/nature01515_fs.html
  Steve Buckingham "Bioinformatics: Programmed for Sucess" (425: 209-211 (2003))
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v425/n6954/full/425209a_fs.html
  Hannah Hoag "In search of form and function" (425: 880-881 (2003))
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v425/n6960/full/nj6960-880a_fs.html
• Nature Review of Molecular Cell Biology
  Miller CJ, Attwood TK, "Bioinformatics goes back to the future". (2003) Nat Rev. Feb;4(2):157-62.
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/nrm/journal/v4/n2/full/nrm1013_fs.html
• Howard Hughes Medical Institute Bulletin
  Maya Pines (2003)"Bringing the Sciences Together" Howard Hughes Medical Institute Bulletin, 16(3): 24-28.
  http://www.hhmi.org/bulletin/june2003/inter/
• Heredity
  Altman RB, "The expanding scope of bioinformatics: sequence analysis and beyond." (2003) Heredity. May;90(5):345.
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/hdy/journal/v90/n5/full/6800225a.html
• Genome
  Golding GB. DNA and the revolutions of molecular evolution, computational biology, and bioinformatics. Genome. 2003 Dec;46(6):930-5.
  
• Experimental Gerontology
  Molidor R, Sturn A, Maurer M, Trajanoski Z. (2003) New trends in bioinformatics: from genome sequence to personalized medicine. Exp Gerontol.
  2003 Oct;38(10):1031-6.
  http://www.sciencedirect.com/
• Biochimie
  Marchal I, Golfier G, Dugas O, Majed M (2003) "Bioinformatics in glycobiology" Biochimie. Jan;85(1-2):75-81.
  http://www.sciencedirect.com/
• Biotechniques
  Brown SM. (2003) "Bioinformatics Becomes Respectable" Biotechniques 34(6): 1124-7.
  
• Methods Mol Biol
  Borzeski H. (2002) "An introduction to bioinformatics" Methods Mol Biol 187: 193-208.
  
• Methods Inf Med
  Grant AM, Moshyk AM, Kushniruk A, Moehr JR (2003) "Reflections on an Arranged Marriage between Bioinformatics and Health Informatics."
  Methods Inf Med. 42(2):116-20.
  
• Clin Invest Med
  Lynn DJ, Lloyd AT, O'Farrelly C (2003) "Bioinformatics: implications for medical research and clinical practice." Clin Invest Med. Apr;26(2):70-4.
  
• Bioessays
  Bard J (2003) "Ontologies: Formalising biological knowledge for bioinformatics." Bioessays. May;25(5):501-6.
  http://www3.interscience.wiley.com/cgi-bin/abstract/104524933/START
• Trends in Biotechnology
  Ibba M. (2002) "Biochemistry and bioinformatics: when worlds collide." Trends Biotechnol; 20: 53-4.
  
• Cell Biology Education
  Campbell A. (2003) "Public Access for Teaching Genomics, Proteomics, and Bioinformatics." Cell Biol Educ. 2003 Jun;2:98-111.
  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12888845
  Honts JE. (2003) "Evolving strategies for the incorporation of bioinformatics within the undergraduate cell biology curriculum." Cell Biol Educ. 2003
  Dec;2:233-47.
  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=14673489
• Science
  Gywne, Peter (2002) "Informatics: Integrating Information"
  http://recruit.sciencemag.org/feature/advice/informatics.shl (advertising supplement to June 14, 2002 Science)
  
• Journal of Chemical Education
  Sophia Kossida, Nadia Tahri, and Iraj Daizadeh "Bioinformatics by Example: From Sequence to Target" 79 (Dec. 2002): 1480-1485
  http://jchemed.chem.wisc.edu/Journal/Issues/2002/Dec/abs1480.html
• Neurosurgery
  Taylor MD, Mainprize TG, Rutka JT. "Bioinformatics in neurosurgery". Neurosurgery 2003 Apr;52(4):723-31.
  https://www.biomedsearch.lib.umn.edu/
• Pharmacogenomics
  Jain E. "Practical bioinformatics". Pharmacogenomics 2003 Mar;4(2):119-21.
  
• Nature Genetics
  Kanehisa M, Bork P. "Bioinformatics in the post-sequence era". Nat Genet 2003 Mar;33 Suppl:305-10
  http://www.nature.com/cgi-taf/DynaPage.taf?file=/ng/journal/v33/n3s/full/ng1109.html
• Mayo Clinic Proceedings
  Elkin PL. "Primer on medical genomics part V: bioinformatics." Mayo Clin Proc 2003 Jan;78(1):57-64
  https://www.biomedsearch.lib.umn.edu/
• Drug Discovery Today
  Gatto JG. "The Changing Face of Bioinformatics". Drug Discovery Today 2003, 8:375-376.
  http://www.sciencedirect.com/